rs50500104 SNP Detail

Summary

• ID
  rs50500104
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145286012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTGTACATCA CAGTCTCTAA TACTAGCAAC AGTATCAAGA
  CCAGATCTCA AACACCTGTT CCCATTGATC CTTCCTGTCC TGACTGGCTA GCATACGGCC
  T
  GTGCTCCACT GAAATTATAT CGATAGGAAA CAGGAATCCA TTCTTCATTA AACTGAGCTT
  TCAAAAGCAG TCACACACCT TCTTAGCAAG TGTCTTGTGA T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147865668	ENSMUSSNP3899734	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50500104					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145286012 () rs orientation: forward

Symbol	Name	Function Class
Gm21978	predicted gene 21978	1187 bp upstream
Rr377362	regulatory region 377362	1945 bp downstream
Rr398684	regulatory region 398684	1192 bp downstream