rs50500371 SNP Detail

Summary

• ID
  rs50500371
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58736387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC ACTAGTCGAT GTGCGCCATT
  M
  CTGTTCATAC CACTGCTACT AGAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132214952	ENSMUSSNP3558111	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50500371					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58736387 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2935	CpG island 2935	1468 bp proximal
Gm12258	predicted gene 12258	1597 bp upstream
Rr246822	regulatory region 246822	1213 bp proximal
Rr402593	regulatory region 402593	1330 bp upstream
Tssr101753	transcription start site region 101753	1592 bp upstream