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rs50500570 SNP Detail
Summary
  • ID
    rs50500570
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr9:72005943 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTGATTTCAG TTGAATCTGC
    TCACTGAAGT ACCATTCTAG GCTAGAAACG AAGAAATAAG TAAAACTGAA GGCAAGAGAG
    GCCCTGGCTA TACAGCCTGC TTTGTGTGCC TACTATTTAG TTACCAGCTA AGCCAATTAA
    ATTATCCAAT ACCGCACCAT GGTTATTTAC ATAATTAACA CTAGAACAGT AGAATAAACA
    R
    GTTTGCAAAG TAAATGGAAA AGCCAGAGCA GATTCTACAA AGCCCAGTTC ACTATACATT
    TCATTATTTC CATAGCTGTG TTAACAGCCA TGGGACAGAA CCAACTAGGC AGTAAGAATC
    TCACTCATTA AAATCATTTA TTTTAATGAA AAAGACTGCA ATGAGTATTA TCATAGGAAT
    AAACATTAGC CACTAATCTG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss61420170 NES16798026 PERLEGEN MM_PANEL2 f SNP A A A A A A A A A A G A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs50500570 SNP A A A A A A A A A A G A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss61420170 NES16798026 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:72005943 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr682691 regulatory region 682691 1193 bp distal
Rr682692 regulatory region 682692 283 bp distal
Rr682693 regulatory region 682693 1153 bp proximal
Tcf12 transcription factor 12 within coordinates
Tssr90473 transcription start site region 90473 715 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory