rs50501241 SNP Detail

Summary

• ID
  rs50501241
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79888781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTCAAAT CAACTTCACA
  GGAATCAATA TCTACAGGTG ACAAGATAGG GCCTGGTGTC ATTGACCTAT CTATCACCCT
  AGTACCTAGG AGTCTAAGGC AGGATTGCTG AGTTCTAAGA CCGGCTGAAC TGTAAAATTG
  GGGGTCGAGG GGGGGGGGAG AAGCTACATC TGGGGTTCGG GACTCAATGG GTTGAGAGCC
  Y
  TCACTTGCAT GCTGCAGGTT CTGGGTTCCA TCCCTACACC TCATGGCAGC ACACTTTTGC
  CATTCCATAG TTTAGGTTAG CCTGAGCTAC AGGAGGCAAC CTCTGATAAA GAAAATAGAA
  ATGGAAGGGA TGTGGGGATT GGCCGACACC GAGATCCCAG CACTCAGTAG GCTGAGGCTG
  GCGGTCCAGG GGTTCAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	PWD/PhJ	WSB/EiJ
ss61291520	NES16900871	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	PWD/PhJ	WSB/EiJ
rs50501241					SNP	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61291520	NES16900871	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79888781 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1840	CpG island 1840	303 bp proximal
Gm65896	predicted gene, 65896	235 bp downstream
Gpx4	glutathione peroxidase 4	within coordinates
Rr384983	regulatory region 384983	within coordinates
Rr402035	regulatory region 402035	356 bp upstream
Rr435055	regulatory region 435055	950 bp distal
Rr435056	regulatory region 435056	510 bp distal
Rr435057	regulatory region 435057	51 bp proximal
Rr435058	regulatory region 435058	1023 bp proximal
Rr435059	regulatory region 435059	1238 bp proximal
Rr435060	regulatory region 435060	1469 bp proximal
Tssr94472	transcription start site region 94472	240 bp upstream
Tssr94473	transcription start site region 94473	612 bp upstream
Tssr94474	transcription start site region 94474	676 bp upstream
Tssr94475	transcription start site region 94475	1019 bp upstream
Tssr94476	transcription start site region 94476	1050 bp upstream
Tssr94477	transcription start site region 94477	1082 bp upstream
Tssr94478	transcription start site region 94478	1099 bp upstream
Tssr98381	transcription start site region 98381	412 bp downstream