rs50501478 SNP Detail

Summary

• ID
  rs50501478
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:20060214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCATCGCC GGGCCAGGCA
  GCACAGCCGG CTGATGCAGG GCCACGCCAT GCCGCTCGGC CGCGCGCCTG CGCCGCGCGC
  GCGCACTACC CCACTGCCCC CGCGCAACCC TGAGCCCCGC AAGGACGGCC TGCGGGCAGT
  CCTAAACCCA GAGTTCCCCC AATGTGAGCT CAGAAATCAG ACCTGGGCTT CATCGAGAGC
  R
  AGGTCGGAAG GAGGCATTTC CTCACCGTCA CTAAGCCTGC TACTTTTTTT TTTTTTTTTT
  TTAAGGAACA ATCAATCCAT CAAGAAGGCT CTGGCGGCAG GACCAGAGAA CTCTGTTGGC
  ATTTGTGGAC ACGGGTGGCT GCAAAATAGA TTTAAACTGT GCCTAGCGGA CTCAGCGACC
  ACCCAGAGTG GAAAGGGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52600693	NES15697968	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50501478					SNP	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52600693	NES15697968	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:20060214 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8068	CpG island 8068	within coordinates
Gm49566	predicted gene, 49566	within coordinates
Map6d1	MAP6 domain containing 1	106 bp upstream
Rr512839	regulatory region 512839	427 bp distal
Rr512840	regulatory region 512840	within coordinates
Tssr140349	transcription start site region 140349	190 bp upstream
Tssr140350	transcription start site region 140350	166 bp upstream
Tssr140351	transcription start site region 140351	101 bp upstream