rs50502250 SNP Detail

Summary

• ID
  rs50502250
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99941285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCTTCT CCATATAGGA
  GGCCAGGCGG TCATTCAGGA ACTGCATGGT CTCCTTCTCA TTGCCATTGA AGGAGCCCTC
  ACAGAACCAA TTGCAGTTGC CCACATTGGC GGGGATGTTG CAGGCCCCAG GCAGGGTGCA
  GCCATGGCAG CTGGGGGGCA CACAGGGCCG GGAGGAGCAG CTGGTGCGGC AGCTCAGGGC
  S
  GGCAGGCAGC AATTGTATGG CATGGTGCTG GAGGGAGGGA GAGAGGTACC TGGCTGAAGA
  CTCGGTGTGA ATTCTCCAAG CCTCAGAGCT CTGAGTCTCC TTCCCTTGGT GAGACTTTAT
  AAGCCTTCTA CAGAGGGTGT GGACACAGTA TGTAACATCT TTTTTTCTTT GTACTTCTTC
  ACTGGTTTTC AGACGCCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss132717794	ENSMUSSNP6143483	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50502250					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99941285 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	418 bp proximal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	264 bp proximal
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	200 bp proximal
Gm11571	predicted gene 11571	1827 bp upstream
Krt31	keratin 31	within coordinates
Tssr104894	transcription start site region 104894	1645 bp upstream
Tssr104895	transcription start site region 104895	1801 bp upstream
Tssr104896	transcription start site region 104896	1822 bp upstream
Tssr110726	transcription start site region 110726	83 bp downstream