rs50502650 SNP Detail

Summary

• ID
  rs50502650
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30206600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACT CCACACCCCA CCAGAAAAGC
  K
  ATCAATCAGG CCCACAGTCT GTGTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147925832	ENSMUSSNP1207958	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	G
ss325129938	CHEV_16_30387868	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50502650					SNP	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30206600 () rs orientation: forward

Symbol	Name	Function Class
Atp13a3	ATPase type 13A3	within coordinates
Cpgi8159	CpG island 8159	24 bp proximal
Gm61087	predicted gene, 61087	1061 bp upstream
Gm61089	predicted gene, 61089	1203 bp downstream
Rr370076	regulatory region 370076	1521 bp upstream
Rr514223	regulatory region 514223	within coordinates
Rr514224	regulatory region 514224	738 bp proximal
Rr514225	regulatory region 514225	1095 bp proximal
Rr514226	regulatory region 514226	1108 bp proximal
Rr514227	regulatory region 514227	1916 bp proximal
Tssr140714	transcription start site region 140714	908 bp downstream
Tssr140715	transcription start site region 140715	986 bp downstream
Tssr140716	transcription start site region 140716	1024 bp downstream
Tssr140717	transcription start site region 140717	1530 bp downstream