rs50503212 SNP Detail

Summary

• ID
  rs50503212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128784564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGCATT TCTTTCAATT
  GAGGTCATTT CCTCTAAGAT GACTATAGCT TGAGTCAAGT TGACATAAAC CTAGACAGCA
  CATGGTACAT GCCTATACTC CCAGATACTC AGAATCAAAA GTTCAAAGCC TATGTAGGCT
  ACAAAGTGAG TTCAAGTCCA TCCTGGACCA TCTAGTGAGA CATTATCTTA TAGTAAAGAG
  Y
  TAAAAGAAGC CAAGGGTTGT AGCTCAGTGG CTGAGTGACC ATGCATCAGG CCCTGAGTTA
  AGTTTCCTGT ATACACTACA GAAGACAAGT CTTCCTTAAG CTTATGTCCT GGGTGGTGGG
  TGACTTCCAT AAAGATGCCC CCCCTCTTTT GCCCCTGAAA GTAGACTGGG TGGGTGCCCC
  TTTGATGGAT TCCCAGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60795382	NES16468461	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50503212					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60795382	NES16468461	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128784564 () rs orientation: forward

Symbol	Name	Function Class
Rr372000	regulatory region 372000	1290 bp downstream
Rr417836	regulatory region 417836	222 bp proximal