rs50503638 SNP Detail

Summary

• ID
  rs50503638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:117808492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACACCTAAA CAGACACACA CTTTTTAATA TAGTGATAAG
  CAAATCATTT TTAAAAATGA ACTAAGAAAA ACTTTGAAAA GAGAAGGAAT GGCCAGCCCC
  Y
  TGCTCGTGGG GTGCGGGATA TTTTACATGA ATGTAGCCTT TCTTGAACTG CGTTTACCCC
  TGTAGTCTAC CTGTAGACTC TGAGCCTGGT GGAACAGCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss138894164	ENSMUSSNP4087276	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324203269	CHEV_12_119083230	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50503638					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:117808492 () rs orientation: forward

Symbol	Name	Function Class
Cdca7l	cell division cycle associated 7 like	within coordinates
Cpgi5229	CpG island 5229	480 bp distal
Rr265167	regulatory region 265167	within coordinates
Tssr3984	transcription start site region 3984	1283 bp downstream
Tssr115551	transcription start site region 115551	1250 bp downstream
Tssr115552	transcription start site region 115552	1017 bp downstream
Tssr115553	transcription start site region 115553	886 bp downstream
Tssr115554	transcription start site region 115554	834 bp downstream