rs50506294 SNP Detail

Summary

• ID
  rs50506294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:92474570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAACGAGTT CTGCCGACTT TCAGCGATGG CTGCCCCTGC
  CTGGGAAGCA TGGCTGTACT TGATGTGCTG GGTTGAAAAC AACCTTAGGG AAAAAATGAA
  Y
  GCAGTGGGTC CTGTCTCTGT CTCTGAGGGT CCGGCCCACC ACCGCTCAAA CATACAGGAC
  AGAGATACGC ATCTGCTGTG CGACAGGTAG GGTAAAGTCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60507776	NES16526006	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50506294					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60507776	NES16526006	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:92474570 () rs orientation: forward

Symbol	Name	Function Class
D16Mit52	DNA segment, Chr 16, Massachusetts Institute of Technology 52	1193 bp distal
Rr324625	regulatory region 324625	809 bp proximal
Rr328209	regulatory region 328209	861 bp distal
Runx1	runt related transcription factor 1	within coordinates
Tssr142142	transcription start site region 142142	210 bp upstream