rs50506354 SNP Detail

Summary

• ID
  rs50506354
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4268590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GGGCTACTTA AGGTTTATTG ACTCATCACA GTGCTAACTA
  GATAAAAGAA ATGAGTCCAG GAACATCTTC AAAAGTTTCA GAAGGAGGGC TAGCAAGCAG
  C
  TGGAATGAGG TCTGCTGGAC CTAGAATTAA GAGCATTTTC AGGGCTGGCC ATGTAGCTCA
  GTTGGCAGAG TATTTCTGTG GCATACAAAA AGTCCTGGTC T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148555729	ENSMUSSNP1045694	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50506354					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4268590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20046	CpG island 20046	1147 bp distal
Prr36	proline rich 36	1131 bp upstream
Rr658993	regulatory region 658993	788 bp distal
Tssr80256	transcription start site region 80256	1587 bp upstream
Tssr80257	transcription start site region 80257	1547 bp upstream
Tssr80258	transcription start site region 80258	1464 bp upstream
Tssr80259	transcription start site region 80259	1422 bp upstream
Tssr80260	transcription start site region 80260	1338 bp upstream
Tssr80261	transcription start site region 80261	1289 bp upstream
Tssr80262	transcription start site region 80262	1087 bp upstream