rs50507258 SNP Detail

Summary

• ID
  rs50507258
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135874791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGA ACTATGCAAT TTAGAGGCCC
  K
  AACTGATCTC GAAGCTCTGA AGCAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147559910	ENSMUSSNP5764264	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
ss321354268	CHEV_4_135703395	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50507258					SNP	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135874791 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15099	CpG island 15099	53 bp proximal
Gm68296	predicted gene, 68296	within coordinates
Rr377254	regulatory region 377254	within coordinates
Rr602286	regulatory region 602286	1947 bp distal
Rr602287	regulatory region 602287	283 bp distal
Rr602288	regulatory region 602288	within coordinates
Tssr39669	transcription start site region 39669	232 bp downstream