rs50507823 SNP Detail

Summary

• ID
  rs50507823
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92490445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCTATGA AAAACTTAAA
  ACTTTTGCCT AATATCCTCT CAGTGGTGAG TGCAAAATGA ATCTTAGTGA ATGTACAGAA
  ATAAAAAAAA AGCCTTAAAA AGAGAGAGTA GAGCATTAGT CAGTATTGGA AAGAAATATA
  AATGAAATGG GTTAAGATTC TTAAACTGAT TTGCAACTGC AGTAAAATAC AGGAGATGCC
  M
  GTTACAATCA CCTTCTACAT CTTCAGTCTG GGAAATGACC GAGGCCTTAA CTCACCCTGA
  ACAAGTGTGA CACATTGCCA GCTAGTGTGG GAAACATCCT TGGGCCTGTG TTTGTGGCAG
  TATCACGATG GGGTTTTGGT TTTGTTTCTC TTTGCTTTGC TTTGAACTAT CTGATGGGCT
  GCAAGCAACA GGAAGTAGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52680818	NES15522607	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50507823					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52680818	NES15522607	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92490445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	436 bp proximal
Dhfr	dihydrofolate reductase	846 bp upstream
Msh3	mutS homolog 3	within coordinates
Rr403896	regulatory region 403896	563 bp upstream
Rr483661	regulatory region 483661	299 bp proximal
Rr483662	regulatory region 483662	580 bp proximal
Rr483663	regulatory region 483663	730 bp proximal
Rr483664	regulatory region 483664	1038 bp proximal
Tssr120622	transcription start site region 120622	811 bp upstream
Tssr120623	transcription start site region 120623	1202 bp upstream
Tssr120624	transcription start site region 120624	1249 bp upstream
Tssr120625	transcription start site region 120625	1275 bp upstream
Tssr120626	transcription start site region 120626	1302 bp upstream
Tssr123429	transcription start site region 123429	566 bp downstream
Tssr123430	transcription start site region 123430	1006 bp downstream