rs50509272 SNP Detail

Summary

• ID
  rs50509272
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:107361697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCTGTCCT GGAACTCACT ATGAAGACCA GGCATTTGCC
  ACCATAAACA GCCTAGCTGC ATCCTTTCGA ATTTCTGCAT CCTTTCCTGT TGAGTGTGTG
  W
  GATCAGCCCT ATGCCTTGCT GTTTATGTGG CACTGAGAAC AAGCCTGCCC TGACGTCCTT
  GTTCAGCTCC TCTAGGGCAG GTGCCGGAGT CTTGTGGAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60659763	NES16255182	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs50509272					SNP	T	T	T	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60659763	NES16255182	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:107361697 () rs orientation: forward

Symbol	Name	Function Class
Cdh1	cadherin 1	within coordinates
Rr669236	regulatory region 669236	1139 bp distal
Tssr79254	transcription start site region 79254	1224 bp upstream