rs50509380 SNP Detail

Summary

• ID
  rs50509380
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:3399377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGG TATCTGTATT CTCTTCCTCC
  T
  AAGATGTCCG TGACAAACAA CTTCA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132926221	ENSMUSSNP5011532	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321724843	CHEV_6_3349377	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50509380					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:3399377 () rs orientation: forward

Symbol	Name	Function Class
Rr134883	regulatory region 134883	224 bp proximal
Rr146113	regulatory region 146113	within coordinates
Rr146114	regulatory region 146114	423 bp proximal
Rr378834	regulatory region 378834	1818 bp downstream
Rr399551	regulatory region 399551	16 bp upstream
Samd9l	sterile alpha motif domain containing 9-like	within coordinates
Tssr59689	transcription start site region 59689	62 bp upstream
Tssr59690	transcription start site region 59690	74 bp downstream
Tssr59691	transcription start site region 59691	168 bp downstream