rs50511401 SNP Detail

Summary

• ID
  rs50511401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:7884720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAAAAGA GATAGGGTTT
  CCCTTTCTTT GTGTGTTGCC ACATAAGCTA AGCTGGCCCC TCCAGGGACT CTCCTGTCTC
  CACCTCCATC TCACAACAGG AGAACTGGTA TTACAGATGT GCACAGCTGC ATTCACTGAG
  CCATCTCTGA ATCCCATTAT GGAATATTTT TAAAGATCAA AAGTAGTGTG GGAATTTTCA
  Y
  GATGAGCAAA GCACAAACAC TTGAACATTA AACTTATTTT GAAAGACAAA AACTTTTGCC
  ATGGTTGCCT GACTCTGTCA ACTTCCTAGG ACTGCCACAT TCAGGTTTAG GAGAAGCATA
  GAGAATACTT GTCCCGAGTT TGCTGTTTGT GCTCTCTTAC ATTTATAGCT CAAGTATCTG
  ACAGTCCTGG AAGTCTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52132941	NES15239898	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50511401					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52132941	NES15239898	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:7884720 () rs orientation: forward

Symbol	Name	Function Class
Gm48614	predicted gene, 48614	within coordinates
Rr427287	regulatory region 427287	1089 bp distal