rs50513337 SNP Detail

Summary

• ID
  rs50513337
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:88822511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTTAGCA TGTGAAAAAC
  AGCAAACACA TTTGCCCAAA CTGGACAGTA AAATGAAGAG CCAAAGGCAA AAGGCACAGC
  AGCTGGCTAT TTTGTGTTGG GCTCTATGAA GGGATACTTC ACTTTGTAGG CAAAGGAAGT
  TAATAAAAAG GCATTGGGAC ATGGGTAAAC GCCTTGAAAA GACTAATGTA AGAGAAAGTG
  R
  ATAAGGGAAA AAAACAGAAA AGGCAACAGC AGAGACAGGC GCGGCAGGGG GCTCAAACTG
  CTACTTTCTG TTTCCCCAGA ATTCCATAAA CATCTTTACA AAATAAATAA GTAAATAAAT
  AAATAAATAG TGCAGCAGAA AGTATTGGGC CGGGATTCAA ATCAATTAGC TCAGCTACTG
  GCAGACATCA GCCATGCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss148793244	ENSMUSSNP3667207	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs50513337					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88822511 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16030	CpG island 16030			240 bp proximal
Gm71600	predicted gene, 71600			1571 bp upstream
Grsf1	G-rich RNA sequence binding factor 1			Intron
				Noncoding-Transcript-Variant
Rr614150	regulatory region 614150			97 bp proximal
Rr614151	regulatory region 614151			1004 bp proximal
Rr614152	regulatory region 614152			1305 bp proximal
Rr614153	regulatory region 614153			1366 bp proximal
Rr614154	regulatory region 614154			1509 bp proximal
Rr614155	regulatory region 614155			1582 bp proximal
Tssr51689	transcription start site region 51689			538 bp downstream
Tssr51690	transcription start site region 51690			890 bp downstream
Tssr51691	transcription start site region 51691			913 bp downstream
Tssr51692	transcription start site region 51692			961 bp downstream
Tssr51693	transcription start site region 51693			1459 bp downstream
Tssr51694	transcription start site region 51694			1483 bp downstream
Tssr51695	transcription start site region 51695			1540 bp downstream
Tssr51696	transcription start site region 51696			1574 bp downstream