rs50513598 SNP Detail

Summary

• ID
  rs50513598
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40554242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTCTGAC ATGAACTTGG
  GCTCTGCTTT TATTTTATGC TCTTCTCCAG CCTTGTGCTG AAACAATCCC CATGGTTTGC
  TGTGCCCCGC TGCTTCAGCT TGTCTTTATG GGGAGAATAG GCTCCGTTTA ATTAAGAGGC
  TTTGGGACTA GTGTGGTCTC ACGGTCCTCT AAATTGTTTT AATTACAGTG CAGTTCTTAA
  Y
  TAGGCATTCC ACGGTGCACA AGCATAGCCT CCGAGCCTTT CAAAGCTACG GTTATATCAC
  TCTCCTCATT GATAAATTAT TGCTCTGTAA AAGTGATGCT GGAGAGAGAG AGTTCATCAG
  AAGAAAGCCT TTAGGTTTGA AATGAAAGGC AAGGTTGGCA GTGCTTGTTT TAGAAGAAGG
  GGGAGGAGGA AGAGGAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60721437	NES16360428	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50513598					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721437	NES16360428	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40554242 () rs orientation: forward

Symbol	Name	Function Class
Il18rap	interleukin 18 receptor accessory protein	306 bp upstream
Rr410075	regulatory region 410075	within coordinates
Rr410076	regulatory region 410076	291 bp proximal
Tssr65	transcription start site region 65	413 bp upstream
Tssr6477	transcription start site region 6477	295 bp upstream
Tssr6478	transcription start site region 6478	360 bp upstream
Tssr6479	transcription start site region 6479	389 bp upstream
Tssr11438	transcription start site region 11438	133 bp downstream
Tssr11439	transcription start site region 11439	1365 bp downstream
Tssr11440	transcription start site region 11440	1375 bp downstream
Tssr11441	transcription start site region 11441	1393 bp downstream
Tssr11442	transcription start site region 11442	1409 bp downstream
Tssr11443	transcription start site region 11443	1440 bp downstream