rs50513690 SNP Detail

Summary

• ID
  rs50513690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126776635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGCTAAT CTCCCCTTTC
  CACTGGGATC CTAGATACTT GCTCATCTGA TGAGAGCAAT ATATCTGGAT TTTAAAAACA
  TTTCCAGATT TAATATACAG CCAAGCTTAA AAACCTTTCA TTATTTAGTG TTTCAGAGTG
  CTGGCCTGGA CCACGGCTCC TGACTGCAGT TTCAGCATCA CCATCCAAAC CTATTGAATC
  Y
  GAGAATCAGA GAATGAGCAT TCCAGAGACC TCATACTGCT ACCTCAGTTT AGCTCAAATA
  AATCTTACTC CTGACCTTCT AAGTTGTCTC AGGGGAACAT TTATACTCTT AAGAGCTTCT
  TGTTGGATGA GAATTCCTAA AATAGGACAC GAAAAAAGGA AAAACTATAC AACAATAAAA
  TCAAATTCAC TTCACCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147514380	ENSMUSSNP536918	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320498585	CHEV_2_126760451	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50513690					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126776635 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12210	CpG island 12210	1311 bp distal
Gm75308	predicted gene, 75308	within coordinates
Rr564422	regulatory region 564422	1628 bp distal
Rr564423	regulatory region 564423	1639 bp distal
Rr564424	regulatory region 564424	1491 bp distal
Rr564425	regulatory region 564425	990 bp distal
Sppl2a	signal peptide peptidase like 2A	1480 bp upstream
Tssr26085	transcription start site region 26085	1625 bp upstream
Tssr26086	transcription start site region 26086	1582 bp upstream
Tssr26087	transcription start site region 26087	1551 bp upstream
Tssr26088	transcription start site region 26088	1488 bp upstream
Tssr26089	transcription start site region 26089	1474 bp upstream
Tssr26090	transcription start site region 26090	835 bp upstream