rs50513888 SNP Detail

Summary

• ID
  rs50513888
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55683860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTTTGCATAT ATGGGGAGAT TAAAGACTAA ATGTGTTCTT
  CCCTGAGCTA CCTGGGAGAG CAGCAGCACC TACTTGAACA CTTTACTAAT TCTTTATTTG
  T
  ATTCTTGACC ATCTAAATTT AAATGACAAT GTGTATTTAC ATGAAACTTG GATTAGAACC
  ATGTGTTCCA AGAATATGAA CACATTATTT AGTATTAGCT A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135190268	ENSMUSSNP352916	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50513888					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55683860 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9630024C22Rik	RIKEN cDNA 9630024C22 gene			within coordinates
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr577001	regulatory region 577001			1831 bp distal
Rr577002	regulatory region 577002			809 bp distal