rs50515270 SNP Detail

Summary

• ID
  rs50515270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21920826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAGCTCT GTGAGTTCGA
  GGCCAGCCTG GTCTACAGAG TGAGTTTCAG GACAGCCAGA GCTATATAGT GAGACCCTAT
  GAAAAACAGG AAAATTAGAA AGAAAGGAAG GAAGAAAGGA AGGAAGGAAG ACAGACTTCA
  TGGCCAGCCT CTGCTACACT AGCCTAGGGT ACATTAGACC CTGAATCAAG TTGGAAAAGA
  Y
  CAGGTACCAA GGTGAGGGAT GCTGAGAAGG GAAAGTGAGG GCAGGCTCCT GCTGGGACAA
  ATCACTCATG GCCTGGCAGG CTCTGAGCAG TGAGTGGCTG TACTGGTTCA GATGTCCCTG
  ATGGCCTCTG GCCACTGTGA GGCTAAACAC GCTGCTGTTC TATCAGCTGT GCGGAGCTCT
  TCCAGGTGTG TGTCACTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61359704	NES16732058	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50515270					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61359704	NES16732058	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21920826 () rs orientation: forward

Symbol	Name	Function Class
Prkcsh	protein kinase C substrate 80K-H	within coordinates
Rr199558	regulatory region 199558	575 bp proximal
Rr199559	regulatory region 199559	975 bp proximal
Rr208358	regulatory region 208358	1026 bp distal