rs50515979 SNP Detail

Summary

• ID
  rs50515979
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127762761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCATTGT GGGACATACC
  GGAAGCAGAG AGGTCTTGCA CCGACTTTCT CCCGTGCCAC CTCAGTTCCC CTTGGGTTCC
  TACCCCATGC TGGGGCGCTG CTCACATTTG CGCTGGGGCT TCCCCACTCG TGCGAATTCC
  ACCTGGAAAT TCCCTCACGG ACACACCCAG AGTCTGTGCC GCACCGGCCT CCCAGGGATT
  M
  TAAATGCAAT CAAGCTGGCA GTGAAGACGA TCCACCACAC ATTTAGGATC AAGTTATTTC
  TGTGCCGAAC GCAGGCAGAT TTTTAAGATC TTGTCATTAT CTTTTTAATC ATACCAGTAT
  GAAAACCATT TACAGGAGTT TATGTTAGGT GTTGTAACGG ACCCAGAGAT GGTTTAAATA
  TACACAGACA TGGCTTTTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135876641	ENSMUSSNP5556775	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss320958785	CHEV_3_127672030	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50515979					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127762761 () rs orientation: forward

Symbol	Name	Function Class
Gm35667	predicted gene, 35667	1809 bp upstream
Gm65460	predicted gene, 65460	within coordinates
Rr52	regulatory region 52	869 bp proximal
Rr584913	regulatory region 584913	1862 bp proximal
Rr584914	regulatory region 584914	1962 bp proximal