rs50516300 SNP Detail

Summary

• ID
  rs50516300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134214622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGGGCT ACACGGAGAG
  ACCCTGTTTC AAAAAACATT CAAAAAAAAA AAAAAAAAAA AGCGTTTACT GCTCTTACAG
  AGGACCGAGG TTCAATTCCC AGCACCCATG TGTAAATTCA GGACCACCAC CACCTATAAA
  TCCATTTCTA GGGCACCCAC TATCCTTCCC AGCCTCCTCC ATCCCCAGGC ACGCACACGG
  Y
  GCACACAACC ATGCAGGGAA AACACTCCCT CCCACCCACA CACACAAAGA TTTTAATGGG
  GGGATGGAGG GGCCTGACAG AGTACCCCAC CACTGCCCTC AGGTGGCCTG GCTGCTCCTC
  TGGGCAGCCA GGCTCTTCAG TGCTTGCTGC TGTAGGAGCC ACTTGTTCTG AGAGACTTTT
  TAATAACAGT GGTGTTTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60846681	NES16012783	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50516300					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60846681	NES16012783	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134214622 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16715	CpG island 16715	1004 bp distal
Gm73509	predicted gene, 73509	146 bp upstream
Gtf2ird2	GTF2I repeat domain containing 2	within coordinates
Rr110116	regulatory region 110116	within coordinates
Rr110117	regulatory region 110117	1379 bp proximal
Rr124476	regulatory region 124476	821 bp distal
Rr130998	regulatory region 130998	1507 bp proximal
Rr399398	regulatory region 399398	1108 bp downstream
Rr399399	regulatory region 399399	1590 bp upstream
Tssr49084	transcription start site region 49084	1737 bp downstream
Tssr53607	transcription start site region 53607	1359 bp upstream
Tssr53608	transcription start site region 53608	1344 bp upstream