rs50516485 SNP Detail

Summary

• ID
  rs50516485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115220912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GAAGAGCAGC AAGGGGGCGC TAGGAGAGGG AACTGGCGAG CGACGGTCCG
  R
  CGAGCGAGAG AGAGCGATCT GGGGTGCGGG GAAGTTGGGG AGCAGAACCT           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss52214183	NES15331638	PERLEGEN	MM_PANEL2	f	SNP	A	A		G
ss323484728	CHEV_10_114822063	CHEVERUD	SCREENING_POP	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs50516485					SNP	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52214183	NES15331638	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115220912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	within coordinates
Rr402239	regulatory region 402239	within coordinates
Rr439213	regulatory region 439213	608 bp distal
Rr439214	regulatory region 439214	693 bp distal
Rr439215	regulatory region 439215	38 bp distal
Rr439216	regulatory region 439216	27 bp distal
Rr439217	regulatory region 439217	215 bp proximal
Thap2	THAP domain containing, apoptosis associated protein 2	572 bp upstream
Tssr95813	transcription start site region 95813	1057 bp downstream
Tssr95814	transcription start site region 95814	58 bp downstream
Tssr95815	transcription start site region 95815	within coordinates
Tssr95816	transcription start site region 95816	38 bp upstream
Tssr99330	transcription start site region 99330	671 bp upstream
Tssr99331	transcription start site region 99331	632 bp upstream
Tssr99332	transcription start site region 99332	572 bp upstream
Tssr99333	transcription start site region 99333	498 bp upstream
Tssr99334	transcription start site region 99334	445 bp upstream
Tssr99335	transcription start site region 99335	211 bp upstream
Zfc3h1	zinc finger, C3H1-type containing	within coordinates