rs50517459 SNP Detail

Summary

• ID
  rs50517459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:16424219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAA TTGCGACCTT ATCCAGGAAG
  R
  AAGAAATCCA ACATTGAGAT AGCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss61574884	NES17524964	PERLEGEN	MM_PANEL2	f	SNP		G			A	G	A
ss137182900	ENSMUSSNP5906765	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss323915863	CHEV_12_16381024	CHEVERUD	SCREENING_POP	f	SNP				G				A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs50517459					SNP	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61574884	NES17524964	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:16424219 () rs orientation: forward

Symbol	Name	Function Class
Gm36372	predicted gene, 36372	within coordinates
Rr269311	regulatory region 269311	168 bp proximal
Rr386910	regulatory region 386910	208 bp upstream