rs50517766 SNP Detail

Summary

• ID
  rs50517766
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:128060084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGGAAGA ATAAATAGCC
  TTATTGGGTT GCATTAGTTT TACCCTAGAT CCACAGTTTC TAGGGTTTTA GTACACCAAA
  CAGATGACTA AACTGCAATT GACTGATATA ATTTAGTGTT GAACTGTGGG TTCAGATACC
  ACAGATAAAT CACTACAGTG CAAAAACACA ACCCAAGGTT GAATGAAGTG TATCCTACAA
  R
  GCTGGTCTAC TTCAAACACA AGTATTTCAA GTACTATGAT CTCATTGGTT TGTTTTTAAG
  ATCACTAATA ACCCCAAATA AATGTCAAAT AAGAATGAGA ACACCAGAAA ACAGACCTTT
  AAAGCATCTA TATGACAAAC AGGATTTCAG ACTCAACATC AAGGCAATTC TATACCACTT
  TAAATACCAT CAAATAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss61060905	NES16065854	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs50517766					SNP	A	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61060905	NES16065854	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128060084 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19791	CpG island 19791			1926 bp proximal
Rr656040	regulatory region 656040			1487 bp proximal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1			Intron
				Noncoding-Transcript-Variant
Tssr75109	transcription start site region 75109			1362 bp downstream