rs50518148 SNP Detail

Summary

• ID
  rs50518148
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48664672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGGATCC TTCCATACCT
  TATAATCCAA GGGCTCTGAC ATCTGTGTCT CACATGACCA TGCAGGGATG ACTGCTACTG
  GGTGTGCTTG TGGCTTTGCC TGTGGATCTT GGGAGATCCA GAGTGGAGAT ACTTGCAACT
  GCCTGTGCTT ACTCGTTGAC TGGACCACTG CCCGCTGCTG CCAACTGTCC TAAGAATGAA
  R
  AGGTGGAGAA CCCAGCTTTG ATATGATGAA TCTAACAAAA ACTGCAGTCT CAATTTGGAA
  ATCTGACTCA TGTGCCTTTA AATGTGTTCA TATTGCCCAT TTACCCTGCT TCTTGAAATG
  CTTCTTGAAA AATAAAGACA AATTTGCATG TGTCTGGGTT TGTTTTCAAT GTTATTACTC
  CTACCTTGAG ATACTTCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60458784	NES16437353	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50518148					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60458784	NES16437353	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48664672 () rs orientation: forward

Symbol	Name	Function Class
Retnla	resistin like alpha	within coordinates
Tssr138680	transcription start site region 138680	1822 bp downstream
Tssr138681	transcription start site region 138681	1729 bp downstream
Tssr138682	transcription start site region 138682	1678 bp downstream
Tssr138683	transcription start site region 138683	1648 bp downstream
Tssr138684	transcription start site region 138684	1614 bp downstream
Tssr138685	transcription start site region 138685	1573 bp downstream
Tssr138686	transcription start site region 138686	1454 bp downstream
Tssr138687	transcription start site region 138687	1412 bp downstream
Tssr138688	transcription start site region 138688	714 bp downstream
Tssr138689	transcription start site region 138689	126 bp downstream
Tssr138690	transcription start site region 138690	69 bp downstream
Tssr138691	transcription start site region 138691	16 bp downstream