rs50519864 SNP Detail

Summary

• ID
  rs50519864
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:42241959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CCTTTATAAA TAAAAAAGAA GCAGCATGAA ACAGGGGTGT
  AATTTCAATA CACATCATGA ACTAAAACTC ATGGCACTAT GGAGGTCCCT GTTATCTATA
  A
  AACCAAATCC TTGCCTTGCT GTTTGGCTTT TTAGGTTTGG TAATGGCTTC CCTCGATATC
  CCACTAACTT TTACTTTTTA TCTTCTGCAG TGTCTCTGTT T                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss134162296	ENSMUSSNP4812193	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50519864					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:42241959 () rs orientation: forward

Symbol	Name	Function Class
Tenm1	teneurin transmembrane protein 1	within coordinates
Tssr163247	transcription start site region 163247	329 bp upstream