rs50520241 SNP Detail

Summary

• ID
  rs50520241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145657092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTAGCTC AGTGCTGGGA
  TTACAGCCAC TGCATGTGGC TTAGGAAAAT ATTTTCCTGA CTGTTTGGCT AAATAGAAAA
  TCCAACCTAC CTGAGACCCT CAGCCTCAGC CTCAGCACCC CCTTCAGCCC TGAACCCCCT
  CGGCTTGTTT AACTCTTCCA GGCCGGGAAC ATGGCTCCCT TTTCAGCACC CTTTAACCAC
  R
  CAATCATGAA GTGCTCATTC ACTGACAAGC CCTCTGGGTT TCTCTTCTCC TCAGTTCACT
  TAAGATAAAA GAAGTTGCAG AGAGAGAGGA GACAGCAGTC TGTCCTCTGA CTGTACGTTA
  AATGTCCCCA AGGGCTCACA TGTTGAAAGG CTCAGTCACC AGCCTGTGTC ATTACCAGGA
  AGTGGTGGTG CCTTTAGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136040894	ENSMUSSNP4807601	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321009198	CHEV_3_145614301	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50520241					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145657092 () rs orientation: forward

Symbol	Name	Function Class
Rr586881	regulatory region 586881	383 bp distal
Rr586882	regulatory region 586882	within coordinates
Rr586883	regulatory region 586883	1325 bp proximal