rs50521068 SNP Detail

Summary

• ID
  rs50521068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:52292871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTGTGTG TATTCCAGCC
  AGATCATACT GTAATCCAGT GTGGATCATG GCCAGATCAT ATCTTTGGCT ACGGTTATTG
  AGAGGAGCCA TGTTGCCCAA TTAAAATTCC TCCACAGGCA TTTCCTGCCA AAGGCAACAA
  AACTTGCAGA TGGACATGAG ACTCACGTTT TAAACTAAAG CAAAGCAATT CTTACAGAAA
  Y
  GAGACCAATT AAAACAGGTG ACAATGGCCA AAACATTAAG GCCTGTAGAC ATTTCCTAAT
  GGGAAAAGGG GCTATACAGT AAAAAATATG TCTGTATTAC ACAGATCCAA CTGTATCTGG
  GCACTGATTC TCTTCTCAGA GTGGCCACAT TGAATCAGTT TCGCTTTTCT GTATTTACCT
  TCTATTGTGT CATTGGTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss61275161	NES16771015	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs50521068					SNP	T	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61275161	NES16771015	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:52292871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1536	CpG island 1536	355 bp proximal
Nus1	NUS1 dehydrodolichyl diphosphate synthase subunit	772 bp upstream
Rr224795	regulatory region 224795	within coordinates
Rr401887	regulatory region 401887	549 bp upstream
Tssr93302	transcription start site region 93302	757 bp upstream
Tssr93303	transcription start site region 93303	814 bp upstream
Tssr93304	transcription start site region 93304	926 bp upstream
Tssr93305	transcription start site region 93305	1096 bp upstream
Tssr93306	transcription start site region 93306	1256 bp upstream