rs50521480 SNP Detail

Summary

• ID
  rs50521480
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165155123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TCCAGGAAAA TGAACAGAAC ACACACAGTT CCCATATCTC
  CATCAGTGTA CAGGGACAGT GTAGACACTT GCCCTTTGGT TTTGTTCTGA TCTTTGCCTA
  R
  CAATTATCCA GCACCCTCTG CCCTCTAGCA AATCCATGCT GCTGGCCTAA AGTCACCCCT
  ACTTTCCATG ACAAAGCTAT CTATCTTCTG CCAGCAGCAG G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145999133	ENSMUSSNP5013416	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50521480					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165155123 () rs orientation: forward

Symbol	Name	Function Class
Dcaf6	DDB1 and CUL4 associated factor 6	1946 bp downstream
Gpr161	G protein-coupled receptor 161	809 bp downstream
Rr20301	regulatory region 20301	478 bp proximal
Rr25485	regulatory region 25485	within coordinates