rs50521998 SNP Detail

Summary

• ID
  rs50521998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23898952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAACCGGAC TGGACGTCCG
  CAGACAAAGC TGACCGAGCA CTCGGTAAGT AGAGAGGGAC AGAGATGAGA GGGAGAGAAT
  GGTCCCCAGC GTGAGCCTGC AAGTGAGAGG AGTCGAAAGG GGCCTATGCC ATTCTTAGGG
  GCAAGGTGGA CTTGTAGAAC CGAGGGTTAT GAAGAGCCAC AGCAGGGCGC CAAGCAGAAC
  Y
  GATTCCCTTC GTATCAACAT CATGAAGAGC AAAATGAAGG ACACAGGTGC CTGTCACAAA
  AGGCACTGGG ATCTTGAATT TTAGCTCCTT AAAGCTGTGT GGAGAGGGGA AAGAAAGGTA
  GCACGGCCTT TGGTCTAAAA CTCAAAAGGA TGCTCCCAGC CTCGAGGCCC GCACCTTGAC
  CCTTAGAGGT GGAGGTGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325326762	CHEV_17_23816945	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50521998					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23898952 () rs orientation: forward

Symbol	Name	Function Class
Cldn6	claudin 6	within coordinates
Cpgi8684	CpG island 8684	97 bp distal
Rr523108	regulatory region 523108	309 bp distal
Rr523109	regulatory region 523109	within coordinates
Tssr142943	transcription start site region 142943	601 bp downstream
Tssr142944	transcription start site region 142944	242 bp downstream
Tssr142945	transcription start site region 142945	223 bp downstream
Tssr142946	transcription start site region 142946	1060 bp upstream
Tssr142947	transcription start site region 142947	1564 bp upstream
Tssr142948	transcription start site region 142948	1817 bp upstream
Tssr146645	transcription start site region 146645	452 bp downstream