rs50522356 SNP Detail

Summary

• ID
  rs50522356
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93873092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGA GCGTAAGTTT CACTTCAGTT
  G
  GGTCTAGAAT TAGCACTTAA GTATC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147378651	ENSMUSSNP4365803	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323407280	CHEV_10_93499975	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50522356					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93873092 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	442 bp distal
Fgd6	FYVE, RhoGEF and PH domain containing 6	within coordinates
Gm49628	predicted gene, 49628	1429 bp upstream
Rr402165	regulatory region 402165	1214 bp downstream
Tssr3327	transcription start site region 3327	855 bp downstream
Tssr95293	transcription start site region 95293	1759 bp downstream
Tssr95294	transcription start site region 95294	1175 bp downstream
Tssr95295	transcription start site region 95295	1109 bp downstream
Tssr95296	transcription start site region 95296	249 bp downstream
Tssr98985	transcription start site region 98985	1461 bp upstream
Tssr98986	transcription start site region 98986	1443 bp upstream
Tssr98987	transcription start site region 98987	1414 bp upstream
Tssr98988	transcription start site region 98988	481 bp upstream
Vezt	vezatin, adherens junctions transmembrane protein	1431 bp upstream