rs50522424 SNP Detail

Summary

• ID
  rs50522424
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21423352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTC TTTACCAAGT CGCGGATGGG
  M
  GCCAGAGCCT GCTTCCTCCG GAGGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52314565	NES15371783	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	C	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50522424					SNP	A	C	C	C	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314565	NES15371783	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21423352 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	within coordinates
Cpgi4477	CpG island 4477	within coordinates
Gm49586	predicted gene, 49586	322 bp upstream
Rr463712	regulatory region 463712	67 bp proximal
Rr463713	regulatory region 463713	178 bp proximal
Rr463714	regulatory region 463714	192 bp proximal
Rr463715	regulatory region 463715	333 bp proximal
Rr463716	regulatory region 463716	372 bp proximal
Rr463717	regulatory region 463717	860 bp proximal
Tssr112932	transcription start site region 112932	339 bp upstream
Tssr112933	transcription start site region 112933	901 bp upstream
Tssr115856	transcription start site region 115856	130 bp downstream
Tssr115857	transcription start site region 115857	150 bp downstream
Tssr115858	transcription start site region 115858	175 bp downstream
Tssr115859	transcription start site region 115859	199 bp downstream
Tssr115860	transcription start site region 115860	255 bp downstream