rs50522459 SNP Detail

Summary

• ID
  rs50522459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107170035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTTATAC TTCTTTCCCT
  CGGAGGACAG AGTCCCAGCA GGCAAAAACT GGATCCAGTT CTCAGGCCAC ACTGCATCCT
  TGCCCGATAC ACTAGCTAAA TTCCCAGAAG AGAAGGAGCC AGGAAGAGGA AGGGAGCCAG
  GGCTCACCAC ATCATCAAGA AGGTGAGACA GGAGTGTCTA TGAGCCTGGT AGTTAGGAAA
  Y
  ACTGAACTAG AGACTCTCCT GCCAGCATCC TCTTAACCCT TGGCACACAC CGTAGCAGCT
  TCAGTGTATC TGTAGGGCCA AGTCCAGAAA ACAGCTGCCT GAATAAACCC AGTAGACACA
  CTTCAGGAAC CTTCTGTGGG GATCTAATTT CCACACCCTC GTGAGTTTCC AGCAGTCCAA
  TTTGGCAGGA TGAAAACTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61696345	NES17647268	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50522459					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61696345	NES17647268	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107170035 () rs orientation: forward

Symbol	Name	Function Class
D12Mit122	DNA segment, Chr 12, Massachusetts Institute of Technology 122	490 bp distal
Gm5187	predicted gene 5187	1300 bp downstream