rs50523073 SNP Detail

Summary

• ID
  rs50523073
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127584301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT CCAGACCCAC CTCCCGGCCG
  Y
  AGCCGGGTCA CAGGAAAGCC CAGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135871368	ENSMUSSNP409308	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320956926	CHEV_3_127493570	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50523073					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127584301 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	524 bp distal
Cpgi13801	CpG island 13801	within coordinates
Gm56817	predicted gene, 56817	395 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr584860	regulatory region 584860	730 bp distal
Rr584861	regulatory region 584861	833 bp distal
Rr584862	regulatory region 584862	406 bp distal
Rr584863	regulatory region 584863	within coordinates
Rr584864	regulatory region 584864	163 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	1450 bp downstream
Tssr31595	transcription start site region 31595	1438 bp downstream
Tssr31596	transcription start site region 31596	1405 bp downstream
Tssr31597	transcription start site region 31597	1365 bp downstream
Tssr31598	transcription start site region 31598	1342 bp downstream
Tssr31599	transcription start site region 31599	843 bp downstream
Tssr31600	transcription start site region 31600	775 bp downstream
Tssr31601	transcription start site region 31601	723 bp downstream
Tssr31602	transcription start site region 31602	669 bp downstream
Tssr31603	transcription start site region 31603	651 bp downstream
Tssr31604	transcription start site region 31604	527 bp downstream
Tssr31605	transcription start site region 31605	13 bp downstream
Tssr31606	transcription start site region 31606	148 bp upstream
Tssr31607	transcription start site region 31607	386 bp upstream
Tssr31608	transcription start site region 31608	454 bp upstream
Tssr31609	transcription start site region 31609	505 bp upstream
Tssr31610	transcription start site region 31610	614 bp upstream
Tssr31611	transcription start site region 31611	722 bp upstream
Tssr35598	transcription start site region 35598	894 bp upstream
Tssr35599	transcription start site region 35599	812 bp upstream
Tssr35600	transcription start site region 35600	784 bp upstream
Tssr35601	transcription start site region 35601	751 bp upstream
Tssr35602	transcription start site region 35602	434 bp upstream