rs50523245 SNP Detail

Summary

• ID
  rs50523245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136347984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGACTCT GCAGTCTGAT
  CCAACATCCC TACAGTGGGT GAGGCCTAAA CTCACCGGCC AAAGCCACTT AGAATTCCCC
  AAAGAGCAAG AGACAGCTTG GGGCTGGAAA GATGGCTCAG TGGTTGAGAA CAGTTGCTGC
  GTTTGTAGAG AACACGAGTT TGGTTCCCAG CACCCATGCT GATATACTAA CAGCTACCTG
  Y
  AACGCCCTCT CTCCATCTCC TGACCTCCAC AGAGCACACA TAATTAAAAT ACAATATTTT
  AAAGGGAAAT ATGAGATATC TTGTATAAAA AAGAAGATGG CCAATTCCTT CCTCTCTGAC
  GTGTGTGTGT ATGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGAGAGAGA GAGAGAGAGA
  GAGAGAGCAC GCATGTGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321356432	CHEV_4_136176588	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50523245					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136347984 () rs orientation: forward

Symbol	Name	Function Class
Lactbl1	lactamase, beta-like 1	1948 bp upstream
Rr86434	regulatory region 86434	417 bp proximal
Rr103033	regulatory region 103033	585 bp distal
Rr106544	regulatory region 106544	773 bp proximal
Rr398615	regulatory region 398615	652 bp upstream
Tssr39716	transcription start site region 39716	1939 bp upstream
Tssr39717	transcription start site region 39717	1958 bp upstream