rs50523448 SNP Detail

Summary

• ID
  rs50523448
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143102307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCGAGACC CCCTCCTCGC GCGCCACAGG TGGCCCCGTG
  ACACTTTGGC TCGAGACCCC CTCCTCGCGC GCCACAGGTG GCCCCGTGAC ACTTTGGCTC
  C
  AGACCCCCTC CTCGCGCGCC ACAGGTGGCC CCGTGACACC TTGGCTCGAG ACCCCCTCCT
  CGCGCGCCAC AGGTGGCCCC GTGACACTTT GGCTCGAGA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss134483109	ENSMUSSNP1418298	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50523448					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143102307 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates
Cpgi22981	CpG island 22981	136 bp distal
Gm2214	predicted gene 2214	1615 bp downstream
Gm33235	predicted gene, 33235	1315 bp upstream
Rr8342	regulatory region 8342	within coordinates
Tssr162274	transcription start site region 162274	1510 bp downstream
Tssr162275	transcription start site region 162275	1277 bp downstream
Tssr162276	transcription start site region 162276	1255 bp downstream
Tssr162277	transcription start site region 162277	1231 bp downstream