rs50525259 SNP Detail

Summary

• ID
  rs50525259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172196628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGA ATGGAGCACA TTGCTGACAA
  R
  CGTTTCCTCT ACCTCAAGGA TCTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120009847	PARCsnp_1.19002	PARC_SEQ	INBRED	f	SNP			A	G
ss120013135	PARCsnp_1.08835	PARC_SEQ	INBRED	f	SNP			A	G
ss146189512	ENSMUSSNP2396653	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320124584	CHEV_1_174299192	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs50525259					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172196628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	within coordinates
Cpgi1046	CpG island 1046	723 bp proximal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	72 bp distal
Tssr10190	transcription start site region 10190	1412 bp upstream
Tssr10191	transcription start site region 10191	1623 bp upstream
Tssr10192	transcription start site region 10192	1803 bp upstream