rs50526396 SNP Detail

Summary

• ID
  rs50526396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:99778965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAGGTTA GTACTTTTAG
  TGACTAAAGG TTAGTACGTG GGTCACACAT GTTCATCTGA CCCCAGCCAT CTGTAATGGG
  ACTGATATCC TCTTCTGGTG TGTCTGAAGA TAGTGACAAT GTACTCACAT GCATAAAAAA
  AATTTTTTTT TAATCCCAAA GAATGAATAT ATATATATTG GAGTTTCAGG GCAAATAGAC
  Y
  ACAGCAGCTC CTAAGGTCAC TGCTGCTCAA CCAGAGGTGT CAGACAAGTT CAAAGGAATG
  TAGCTGCGCT CTGTGCTTAC CTACAACTTC CTGAGTGAAG ACTGGAGTTC CTGGCCAGCC
  TCTGAGGACT ATCTGCAGCT CCCGCTATAT ACTGCTATAC TGTATACTAT ATACTGCGTA
  CTGTATACTG CTCAGGCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63629273	NES17045238	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50526396					SNP	C	T	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63629273	NES17045238	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:99778965 () rs orientation: forward

Symbol	Name	Function Class
Gm18095	predicted gene, 18095	281 bp downstream
Gm49494	predicted gene, 49494	within coordinates
Gm63271	predicted gene, 63271	within coordinates
Rr308871	regulatory region 308871	1836 bp proximal