rs50526397 SNP Detail

Summary

• ID
  rs50526397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124020828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAATTCT TAAGTAGATT
  TTCGCTTGGT ATAAACAATT TTTATTTTCT TATTTTGACA TTTTTTAAAA ACTACTACAA
  AAAGTGGCTA TCATCGAAAC CCTTTTCTTA AAGTCACTAA TTTTAGTGCC TTTTTTTAAA
  TGTAAAGATT AATGTATTGT TCTTCCCATT ACATAGCCCC TTTCATGTCT ACATCAGGTG
  R
  TATGGGATCA TATCAAACTT AAATATGGAC TATGTCCTGT TATATGACAA GTGAACAGCA
  CTTTAAACCA TGATGAACTG TAAACTCTTT CACATTTGTG TATTTGAAGA AATAAAAGTC
  ACACAAAACT CCAATTTCTT GGCCAATTCC CATTCCAGAA AAAGTCAAGA TACAAATGGA
  GCCATGTTTT TAAATAGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60445844	NES15938645	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A	A	G	G	G		A	G	G	A		G
ss135782631	ENSMUSSNP631941	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss320926425	CHEV_3_123930097	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50526397					SNP	G	G	A	G	A	G	A	A	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445844	NES15938645	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124020828 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	979 bp distal