rs50526786 SNP Detail

Summary

• ID
  rs50526786
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128359843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGGAGT TCAAAACCAG
  TCTGGGCTAT ATGAGACTAT GAGTTAAACA AAGGGGGAAA AAAGTTGTTT TTCTGTTTGT
  TTGTAGATAG GGTTTCAATA TGTAGCCCTG GCTGACCAGG AACTCACTAT AAAGACCAAG
  ATGTCCTCCA GTTCACAAAA ATCCACCTGC TTCTGCCTCC CAAGTGCTAG GATTAAAGGC
  R
  TGTCACCACG CCCAGTAAGA AAAAAGTTTC AACACAGATC CAAGCATACA ATCCCGGGGG
  TGGGAGAATT CTTTCCTTAG AACTTGGGGA CACTGAGGCT TCTTTAATAA GGGGAGTGGG
  TAGGATGTGG GGCCACATAG AGATGCTTCA GCTAGCTCAG AGATGCGAAA TGGCAGCTTC
  TGGGGCCAAG GAGGGGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147740705	ENSMUSSNP5829006	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss323534402	CHEV_10_127961030	CHEVERUD	SCREENING_POP	f	SNP			G		A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50526786					SNP	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128359843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2406	CpG island 2406	732 bp proximal
Esyt1	extended synaptotagmin-like protein 1	within coordinates
Gm29585	predicted gene 29585	within coordinates
Rr224467	regulatory region 224467	within coordinates
Rr369107	regulatory region 369107	978 bp upstream
Rr369108	regulatory region 369108	1332 bp upstream
Rr402353	regulatory region 402353	1890 bp upstream
Tssr99886	transcription start site region 99886	1494 bp upstream
Tssr99887	transcription start site region 99887	1887 bp downstream