rs50527439 SNP Detail

Summary

• ID
  rs50527439
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:163898337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCACCTCTA GCAGCACCCA
  ATCAGGGCAC AGTGGAATGC AGTCACTCCC TGGCCAACTT CAGTTTTACT TCTGCTTGTA
  CCTTCACCTG CTCAGAAGGA ACCAACTTAA TTGGCAAGAG AAAAACTGTC TGCAGATCAT
  CTGGCACCTG GTCTAGTCCT AGTCCAATAT GTCAGCATGA GTAATTTTAC TCAGAAATAC
  K
  GAAGGCTTAA AGCCGGAGCT GATCAGCTAG CAGAAGACAG AAAGGAGATA ACAAACACTT
  AAGTCCCTTT CCCTCAATAC ATGTGGCCTA AGAAACAAAT GGATATGCAG TTGTGCACTA
  TAAAATCCTT GCCTGTTCTT AGGCTTTCCT TTCATGATAA TTATTTTCTT TCTCAACTCT
  CCTATTGCTT TAAAGTGTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60338785	NES15834962	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50527439					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60338785	NES15834962	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163898337 () rs orientation: forward

Symbol	Name	Function Class
Gm57120	predicted gene, 57120	within coordinates
Rr396477	regulatory region 396477	435 bp upstream
Rr396478	regulatory region 396478	1426 bp upstream
Rr422139	regulatory region 422139	1111 bp distal
Rr422140	regulatory region 422140	150 bp proximal
Sell	selectin, lymphocyte	within coordinates