rs50527445 SNP Detail

Summary

• ID
  rs50527445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90628071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCTCCGCC CCCTCCCCTT GGCTGGGGAT CCCGGACCCG
  GCGGCGACCG CCTAAGAAGC TCCAGCAGCC TGGACAAGGA GGCGGCAGGG GGCCGGGAGC
  Y
  GGTGGCTACA GACTCGCCCC GCCATGTGAC GCGGTCCTCC TTGCCTGCGA TCCCAGCGCC
  AGCGCCCGCG CCCAGCCGCG CCGCGCATCA TGCTCCTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148543125	ENSMUSSNP834223	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50527445					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90628071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8431	CpG island 8431	within coordinates
Eva1c	eva-1 homolog C	within coordinates
Rr519213	regulatory region 519213	60 bp distal
Tssr139312	transcription start site region 139312	1081 bp downstream
Tssr139313	transcription start site region 139313	1050 bp downstream
Tssr139314	transcription start site region 139314	758 bp downstream
Tssr139315	transcription start site region 139315	305 bp downstream
Tssr139316	transcription start site region 139316	33 bp downstream
Tssr139317	transcription start site region 139317	32 bp upstream
Tssr139318	transcription start site region 139318	1588 bp upstream