rs50529393 SNP Detail

Summary

• ID
  rs50529393
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:111860460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGTTATT TTTATTTAAG
  AATGTGTAAT AGAGATGGTA AAGGATTGCG TTTCCGTGTT AAAGGAAACC TATCCTGTCC
  AAACCTCACC CACAAAGGCA TTGCAAGTTT CTATCTTTCT GGGGTTTACC TTTGTCTGAC
  CTTGGCTCCT TGCTTTCTGC TCTATTGGGG ACAATGGCAG GTGAGAAGTC GGGTGATTGA
  C
  ATATGGGAAA AAGCAAATGC AAACTGCCCA CACTGGGATT GTTCTTTGTC AACACACATA
  GTTGGCTGTA AATGCAGTAT TTCCATTAAC ACCATATGTT AGACAATTAA TTGTATCTAT
  TGGATCAAAG TCTTAGTTTC TTCTTACCTA CTGTGGAAGC TAGTGAGCAG AATCACTGTA
  TTTAGTGGGT CCCATATAAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss134277743	ENSMUSSNP4320006	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50529393					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:111860460 () rs orientation: forward

Symbol	Name	Function Class
Rr2637	regulatory region 2637	460 bp distal
Rr6449	regulatory region 6449	708 bp distal