rs50530078 SNP Detail

Summary

• ID
  rs50530078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8472180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTAAAAAC ATGCCTAGTA
  CGTGACAGCT ATATTAACTT CACTCTTTTT AACATTTATC CATACGTTTT CAGGAAAGGT
  GGAGCAATTT TTTGTAAGCA GCATGCTAAA CTCAAAAATA ACCCGCAAAA AAGTTATTCT
  ACAGTGACAA AAACTTAAGA CCCAGAATAT TTAAAGGGCT ATTTTAACCA CTACCATTAC
  R
  AGGGGCCGCC TTGAGTAGTG TTGCTACCTT TTAACAAATG AGTTCTCCCT CAGCGAATAT
  GAAACAAAGT ATCAAACGGG ACATTTCTTT TTCTGTGCAA TTTTTAAAGT CTGAGGACTT
  TTAAAAAGGT ATTTCCGTCT TACACCAACT TCCATTGCCA AAGCCGCGAG AAACAAGCTC
  CCAACATCTA ACTTACTCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147049399	ENSMUSSNP570187	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50530078					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8472180 () rs orientation: forward

Symbol	Name	Function Class
AW557046	expressed sequence AW557046	within coordinates
Cpgi6933	CpG island 6933	790 bp proximal
Nipbl	NIPBL cohesin loading factor	within coordinates
Rr369900	regulatory region 369900	187 bp upstream
Tssr130591	transcription start site region 130591	909 bp upstream
Tssr133664	transcription start site region 133664	1468 bp downstream
Tssr133665	transcription start site region 133665	1522 bp downstream
Tssr133666	transcription start site region 133666	1739 bp downstream
Tssr133667	transcription start site region 133667	1753 bp downstream
Tssr133668	transcription start site region 133668	1913 bp downstream