rs50530088 SNP Detail

Summary

• ID
  rs50530088
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3767801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGAAGGG ACCATTGGAA
  TTTGACGGAT GGTGTGGGGT TCCAGAGAAA CAAGGGAATG TCTGGTGGAA AGAGAAGCAC
  TGAAAACCCT CAGCTGGGTC CATTCCTCCC CCACCCCTCG TCCTATCTCT GGCTCACTGT
  TCTGGCGCTT GACAGCTTCC AGTGCCTGGA ACAGCTCACT GCGGATGTTC TCACGGTCTC
  K
  GCTTGCTTTA GCCAAGTCCT GGGTCACTAC AAGGTCAGAA GAGTGGACAT TTATAGTTGA
  GGTTAAGACC GGGACTTATG TATAGGTCAA AATATATATC CATGGTCAGT TCATGGTGTC
  ACGGTCAAGA ATAACATCAA TTTGAACGTG GCGGTTTCAG TTACTCCAGA AAGCTGAGGT
  AGAGGAGGAT TGTAAGGTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61076263	NES16052883	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T	T	T	T	T	T	T	T	G	T
ss148548780	ENSMUSSNP5053737	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50530088					SNP	G	G	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076263	NES16052883	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3767801 () rs orientation: forward

Symbol	Name	Function Class
Clec4g	C-type lectin domain family 4, member g	within coordinates
Cpgi20034	CpG island 20034	824 bp proximal
Gm16553	predicted gene 16553	within coordinates
Rr400747	regulatory region 400747	768 bp upstream
Rr658970	regulatory region 658970	798 bp proximal
Rr658971	regulatory region 658971	919 bp proximal
Tssr80223	transcription start site region 80223	243 bp upstream
Tssr80224	transcription start site region 80224	219 bp upstream