rs50530143 SNP Detail

Summary

• ID
  rs50530143
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73188993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAG TTTATTCAAA GACATCACTT
  M
  AAGAGTTAGA GCAGTCTGAT CAATG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61020023	NES16105290	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	A	C		A	C	C	A		A
ss322260283	CHEV_7_80684131	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50530143					SNP	C	C	C	C	C	C	A	C	A	C	C	A	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61020023	NES16105290	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73188993 () rs orientation: forward

Symbol	Name	Function Class
Chaserr	CHD2 adjacent suppressive regulatory RNA	553 bp downstream
Chd2	chromodomain helicase DNA binding protein 2	within coordinates
Cpgi19266	CpG island 19266	1087 bp distal
Gm44686	predicted gene 44686	within coordinates
Rr380950	regulatory region 380950	531 bp downstream
Tssr67202	transcription start site region 67202	1275 bp downstream
Tssr67203	transcription start site region 67203	1187 bp downstream
Tssr67204	transcription start site region 67204	1153 bp downstream
Tssr67205	transcription start site region 67205	119 bp upstream
Tssr72947	transcription start site region 72947	1479 bp upstream
Tssr72948	transcription start site region 72948	15 bp downstream
Tssr72949	transcription start site region 72949	1643 bp downstream
Tssr72950	transcription start site region 72950	1840 bp downstream