rs50530986 SNP Detail

Summary

• ID
  rs50530986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127204520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAAAGTTG GAGTTGGGGT
  TCCTGGACTT TATATCTTCC TCTCCCTTCC CCAATGTGGC CAAATCAATC AAATCTCCCT
  TTGTCTGCTT TTCACCACTA TTCCATTGTT CCTCTCTTTA GCCAAAATAC TGGGATGGGT
  GGCCAAGCCT CACCTGTCGT GGTTGCTGGA GGCCAGGAAA AACCCTAGCA GAGAAAATTA
  Y
  CCTCTTTATT TTAACTTCCT ATGCATTCGG GTCCCTAAAG CAGTTCAGGC ATATATGTGG
  AAACAGTGAA AAAGCATTTG AACACCATGC ACCATGGTAT CATTTCTAGT GACTTAAACC
  CCATGCCCTC AGAGACACTA CACAGTTTTT GATGCTTTGT GCATAACATC AAAGAAATGG
  AGCCAGCCTA GATGTTCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135862716	ENSMUSSNP1661208	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320953880	CHEV_3_127113789	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50530986					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127204520 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Cpgi13790	CpG island 13790	1956 bp distal
Gm52631	predicted gene, 52631	within coordinates
Rr584773	regulatory region 584773	1915 bp distal
Rr584774	regulatory region 584774	1322 bp distal
Tssr35571	transcription start site region 35571	1984 bp upstream
Tssr35572	transcription start site region 35572	1890 bp upstream
Tssr35573	transcription start site region 35573	1863 bp upstream
Tssr35574	transcription start site region 35574	1828 bp upstream
Tssr35575	transcription start site region 35575	1807 bp upstream