rs50531084 SNP Detail

Summary

• ID
  rs50531084
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:61963546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTAACAT TAAAGTTTCT
  ATAATGTCAG CCAAAAATAT TCAACTAAAT CTAGGTTATG CTTCTGTAAG AACACATACT
  GTAGTAGAAA CAACCCAAAA CTGCAAAAGC ATTTTAAAAT GTAGTAGAGA TGTCACATCA
  TTCACTTTAG CATGCTTGAC ATAATTTTTT AAAAAGAAGA TACTGATTTA GGTGTATTTT
  R
  AGGAACTTGG TTCATATTTT TTTCCATAAA GAGTTACTCA TTGATGTGTT ATGTGTGTGT
  GTGTGTGTGG GGGGGTGTTT GTGTGTGTAG AATACCTTCT TGCAATAAGT TCACAGCAGA
  AGTCTCAGTG ATTGATGTAC TGTCTGATGT TCCTATTCTG TAGTTTATTT ACCTCCTTGT
  TTTCCGGTCT GAGTACCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61171336	NES16678235	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50531084					SNP	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61171336	NES16678235	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:61963546 () rs orientation: forward

Symbol	Name	Function Class
Gm73520	predicted gene, 73520	542 bp upstream
Tssr46354	transcription start site region 46354	497 bp upstream
Tssr46355	transcription start site region 46355	519 bp upstream
Tssr46356	transcription start site region 46356	536 bp upstream